Symptom terminologies |
symptoms.tsv |
The basic information of all symptom terminologies in SympGAN. |
Disease terminologies |
diseases.tsv |
The basic information of all disease terminologies in SympGAN |
Drug terminologies |
drugs.tsv |
The basic information of all drug terminologies in SympGAN |
Gene terminologies |
genes.tsv |
The basic information of all gene terminologies in SympGAN |
Curated symptom-gene associations |
curated_symptom_gene_associations.tsv |
Symptom-gene associations that are extracted from phenotype-genotype associations |
literature-derived symptom-gene associations |
literature_symptom_gene_associations.tsv |
Symptom-gene associations derived from the literature databases (i.e., PubMed and SemMed) |
Inferred symptom-gene associations |
inferred_symptom_gene_associations.tsv |
Symptom-gene associations predicted by prediction algorithm (i.e., LSGER). |
All the symptom-gene associations |
all_symptom_gene_associations.tsv |
All the symptom-gene associations that integrated curated, literature-derived and inferred associations |
Symptom-disease associations |
symptom_disease_associations.tsv |
Integrative symptom-disease associations from multiplex databases (i.e., DO, HPO, MalaCards, HSDN, Orphanet, UMLS) |
Symptom-drug associations |
symptom_drug_associations.tsv |
Integrative symptom-drug associations from Sider database. |
Drug-target associations |
drug_target_associations.tsv |
Integrative drug-target associations from Drugbank database. |
All knowledge graph triples |
SympGAN_KG.txt |
All knowledge graph triples in SympGAN. |
Readme file |
readme.txt |
The details of each column of all the data files |